Publications 2001 - 2010

2010

  • ALVAREZ-PRESAS, M., CARBAYO, F., ROZAS, J. and RIUTORT, M.
    Planárias terrestres, Mata Atlántica y biodiversidad.
    Quercus 291:80-81 (2010).
  • CARBAYO, F., ALVAREZ-PRESAS, M., ROZAS, J. and RIUTORT, M.
    Planárias terrestres na Mata Atlântica: Filogeografia e implicações para a gestão do corredor da Serra do Mar.
    Ciência Hoje. 45:44-49 (2010).
  • KIRKNESS, E. F. et al.
    Genome sequences of the human body louse and its primary endosymbiont provides insights into the permanent parasitic lifestyle.
    Proc. Natl. Acad. Sci. USA. 107:12168-12173 (2010).
  • ORENGO, D.J. and AGUADÉ, M.
    Uncovering the footprint of positive selection on the X chromosome of Drosophila melanogaster.
    Mol Biol Evol. 27:153-160 (2010).
  • PÉREZ-ALIQUICIRA, J., MARTÍNEZ-MEYER, E., MOLINA-FREANER, F. E., PIÑERO, D., ROZAS, J., WELLER, S. G. and DOMÍNGUEZ, C. A.
    The role of historical factors and natural selection in the evolution of breeding systems of Oxalis alpina in the Sonoran desert “Sky Islands”.
    J. Evol. Biol. 23:2163-2175 (2010).
  • ROZAS, J.
    La teoria de l'evolució 150 anys després.
    Institut Municipal de Barcelona i Museu de Ciències Naturals de Barcelona, Barcelona (2010).
  • THE INTERNATIONAL APHID GENOMICS CONSORTIUM
    Genome Sequence of the Pea Aphid Acyrthosiphon pisum.
    PLoS Biol 8:e1000313.doi:10.1371/journal.pbio.1000313 (2010).
  • ZHOU, J.-J., VIEIRA, F. G., HE, X.-L., SMADJA, C., LIU, R., ROZAS, J. and FIELD, L. M.
    Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum.
    Insect Mol. Biol. 19 (Suppl. 2):113-122 (2010).

2009

  • AGUADÉ, M.
    Nucleotide and copy-number polymorphism at the odorant receptor genes Or22a and Or22b in Drosophila melanogaster.
    Mol Biol Evol 26(1):61-70 (2009)
  • AGUADÉ, M.
    Polimorfisme nucleotídic i canvis adaptatius recents.
    Treballs de la Societat Catalana de Biologia 60:93-102 (2009)
  • ALVAREZ-PONCE, D., AGUADÉ, M. and ROZAS, J.
    Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes
    Genome Research 19(2):234-42 (2009)
  • GUIRAO-RICO, S. and AGUADÉ, M.
    Positive selection has driven the evolution of the Drosophila Insulin-like Receptor (InR) at different time scales.
    Mol Biol Evol 26(8):1723-32 (2009)
  • LIBRADO, P. and ROZAS, J.
    DnaSP v5: A software for comprehensive analysis of DNA poly-morphism data.
    Bioinformatics 25(11):1451-2 (2009) 
  • ROZAS, J.
    Bioinformática y Evolución Molecular.
    Ambiociencias 5: 101-105 (2009)
  • ROZAS, J.
    DNA Sequence Polymorphism Analysis Using DnaSP.
    Pp. 337-350 in Posada, D. (ed.) Bioinformatics for DNA Sequence Analysis; Methods. In Molecular Biology Series Vol. 537. Humana Press, NJ, USA (2009)
  • ROZAS, J., SÁNCHEZ-GRACIA, A. and VIEIRA, F.G.
    Evolución molecular y adaptación en las familias multigénicas del sistema quimiorreceptor de los insectos. Pp. 41-49. In Dopazo, H. and Navarro, A. (eds).
    Evolución y Adaptación. 150 años después del Origen de las Especies. Sociedad Española de Biología Evolutiva. (2009).
  • SÁNCHEZ-GRACIA, A., VIEIRA, F.G. and ROZAS, J.
    Molecular evolution of the major chemosensory gene families in insects.
    Heredity. 103(3):208-16 (2009)

2008

  • ANDRÉS, O., KELLERMANN, T., LÓPEZ-GIRÁLDEZ, F., ROZAS, J.,
    DOMINGO-ROURA, X. and BOSCH, M.
    RPS4Y gene family evolution in primates.
    BMC Evol Biol 8:142 (2008)
  • CONCEIÇÃO, I.C. and AGUADÉ, M.
    High incidence of interchromosomal transpositions in the evolutionary history of a subset of or genes in Drosophila.
    J Mol Evol. 66(4):325-332 (2008)
  • NÓBREGA, C., KHADEM, M., AGUADÉ, M. and SEGARRA, C.
    Genetic exchange versus genetic differentiation in a medium-sized inversion of Drosophila: the A2/Ast arrangements of Drosophila subobscura.
    Mol Biol Evol 25(8):1534-1543 (2008)
  • RAMIREZ, A., RAMOS-ONSINS, S. E., ROZAS, J., CALAFELL, F. and NAVARRO, A.
    Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination.
    Genetics 179:555-567
  • RAMOS-ONSINS, S. E., PUERMA, E., BALAÑÁ-ALCAIDE, D., SALGUERO and D., AGUADÉ, M.
    Multilocus analysis of variation using a large empirical data set: phenylpropanoid pathway genes in Arabidopsis thaliana.
    Mol Ecol. 17(5):1211-1223 (2008)
  • SANCHEZ-GRACIA, A. and ROZAS, J. 
    Divergent Evolution and Molecular Adaptation in the Drosophila Odorant-Binding Protein Family: Inferences from Sequence Variation at the OS-E and OS-F genes
    BMC Evol. Biol. 8:323 (2008)
  • SCHAEFFER, SW et al.
    Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps.
    Genetics 179(3):1601-1655 (2008)

2007

  • CLARK, A. G. et al.
    Evolution of genes and genomes on the Drosophila phylogeny. 
    Nature 450: 203-218 (2007)
  • ORENGO, D.J. and AGUADÉ, M.
    Genome scans of variation and adaptive change: extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster.
    Mol Biol Evol. 24: 1122-1129 (2007)
  • PAPACEIT, M., AVILA, V., AGUADÉ, M. and GARCÍA-DORADO, A.
    The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.
    Genetics 177: 511-22 (2007)
  • SANCHEZ-GRACIA, A. and ROZAS, J.
    Unusual pattern of nucleotide sequence variation at the OS-E and OS-F genomic regions of Drosophila simulans
    Genetics 175: 1923-1935 (2007)
  • VIEIRA, F. G., SANCHEZ-GRACIA, A. and ROZAS, J. 
    Comparative genomic analysis of the Odorant-Binding Protein family in 12 Drosophila genomes: Purifying selection and birth-and-death evolution. 
    Genome Biol. 8: R235 (2007)


2006

  • BALAÑÁ-ALCAIDE, D., RAMOS-ONSINS, S. E., BOONE, Q. and AGUADÉ, M.
    Highly structured nucleotide variation within and among Arabidopsis lyrata populations at the FAH1 and DFR gene regions
    Mol Ecol. 15: 2059-2068 (2006)
  • HUTTER, S., VILELLA, A. J. and ROZAS, J. 
    Genome-Wide DNA Polymorphism Analyses using VariScan. 
    BMC Bioinformatics 7: 409 (2006)
  • PAPACEIT, M., AGUADÉ, M. and SEGARRA, C.
    Chromosomal evolution of elements B and C in the Sophophora subgenus of Drosophila: evolutionary rate and polymorphism
    Evolution Int J Org Evolution 60: 768-81 (2006)
  • QUESADA, H., RAMOS-ONSINS, S. E., ROZAS, J. and AGUADÉ, M. 
    Positive Selection Versus Demography: Evolutionary Inferences Based on an Unusual Haplotype Structure in Drosophila simulans
    Mol. Bio. Evol. 23: 1643-1647 (2006)
  • OJEDA, A., ROZAS, J., FOLCH, J. M. and PEREZ-ENCISO, M. 
    Unexpected high polymorphism at FABP4 gene unveils a complex history for pig populations. 
    Genetics 174: 2119-2127 (2006)

2005

  • BRAVERMAN, J., LAZZARO, B., AGUADÉ, M. and LANGLEY, C. H.
    DNA Sequence Polymorphism and Divergence at the erect wing and suppressor of sable loci of Drosophila melanogaster and D. simulans
    Genetics 170: 1153-1165 (2005).
  • MUNTÉ, A., ROZAS, J., AGUADÉ, M. and SEGARRA, C.
    Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura.
    Genetics 169: 1573-1581 (2005).
  • QUESADA, H., RAMOS-ONSINS, S. E. and AGUADÉ, M.
    Birth-and-death evolution of the Cecropin multigene family in Drosophila
    J. Mol. Evol. 60: 1-11 (2005).
  • VILELLA, A. J., BLANCO-GARCÍA, A., HUTTER, S. and ROZAS, J.
    VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. 
    Bioinformatics 21: 2791-2793 (2005).

2004

  • AGUADÉ, M., ROZAS, J. and SEGARRA, C. 
    Inferring the action of natural selection from DNA sequence comparisons: data from Drosophila
    Pp. 11-19 in Moya, A. and Font, E. (eds.) Evolution: from Molecules to Ecosystems. Oxford Univ. Press. (2004).
  • ORENGO, D. J. and AGUADÉ, M. 
    Detecting the Footprint of Positive Selection in a European Population of Drosophila melanogaster: Multilocus Pattern of Variation and Distance to Coding Regions
    Genetics 167: 1759-1766 (2004).
  • PICCINALI, R., AGUADÉ, M. and HASSON, E.
    Comparative Molecular Population Genetics of the Xdh Locus in the Cactophilic Sibling Species Drosophila buzzatii and D. koepferae
    Mol. Biol. Evol. 21: 141-152. (2004).
  • RAMOS-ONSINS, S. E., STRANGER, B. E., MITCHELL-OLDS, T. and AGUADÉ, M.
    Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata
    Genetics 166: 373-388 (2004).

2003

  • NAVARRO-SABATÉ, A., AGUADÉ, M. and SEGARRA, C.
    Excess of Nonsynonymous Polymorphism at Acph-1 in Different Gene Arrangements of Drosophila subobscura 
    Mol. Biol. Evol. 20: 1833-1843. (2003).
  • PÉREZ, J. A., MUNTÉ, A. ROZAS, J., SEGARRA, C. and AGUADÉ, M.
    Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation
    Mol. Biol. Evol. 20: 1867-1875. (2003).
  • QUESADA, H., RAMÍREZ, U. E. M., ROZAS, J. and AGUADÉ, M.
    Large-Scale Adaptive Hitchhiking upon High Recombination
    Genetics 165: 895-900. (2003).
  • ROZAS, J., SÁNCHEZ-DELBARRIO, J. C., MESSEGUER, X. and ROZAS, R.
    DnaSP, DNA polymorphism analyses by the coalescent and other methods
    Bioinformatics 19: 2496-2497. (2003).
  • SANCHEZ-GRACIA, A., AGUADÉ, M. and ROZAS, J.
    Patterns of Nucleotide Polymorphism and Divergence in the Odorant-Binding Protein Genes OS-E and OS-F: Analysis in the Melanogaster Species Subgroup of Drosophila
    Genetics 165: 1279-1288. (2003).

2002

  • ELSNER, H. A., ROZAS, J. and BLASCZYK, R.
    The nature of introns 4-7 largely reflects the lineage specificity of HLA-A alleles.
    Immunogenetics 7: 447-462 (2002).
  • KUITTINEN, H., AGUADÉ, M., CHARLESWORTH, D., HAAN, A. D. E., LAUGA, B., MITCHELL-OLDS, T., OIKARINEN, S., RAMOS-ONSINS, S., STRANGER, B., VAN TIENDEREN, P. and SAVOLAINEN, O.
    Primers for 22 candidate genes for ecological adaptations in Brassicaceae.
    Mol. Ecol. Notes 2: 258-262 (2002)
  • KUITTINEN, H., SALGUERO, D., and AGUADÉ, M.
    Parallel Patterns of Sequence Variation Within and Between Populations at Three Loci of Arabidopsis thaliana
    Mol. Biol. Evol. 19: 2030-2034. (2002). 
  • RAMOS-ONSINS, S. E. and ROZAS, J. 
    Statistical properties of new neutrality tests against population growth. 
    Mol. Biol. Evol. 19: 2092-2100. (2002).   

2001

  • AGUADÉ, M. 
    Nucleotide sequence variation of two genes of the phenylpropanoid pathway, the FAH-1 and F3H genes, in Arabidopsis thaliana
    Mol. Biol. Evol. 18: 1-9. (2001). 
  • AGUADÉ, M. 
    Evolució Molecular: El rellotge de la vida
    Mètode, UV 28: 32-35 (2001). 
  • KHADEM, M., ROZAS, J., SEGARRA, C., and AGUADÉ, M. 
    DNA variation at the rp49 gene region in Drosophila madeirensis and D. subobscura from Madeira: inferences about the origin of an insular endemic species. 
    J. Evol. Biol. 14: 379-387. (2001). 
  • MUNTÉ, A., AGUADÉ, M. and SEGARRA, C. 
    Changes in the recombinational environment affect divergence at the yellow gene in Drosophila
    Mol. Biol. Evol. 18: 1045-1056. (2001). 
  • ROZAS, J., GULLAUD, M., BLANDIN, G. and AGUADÉ, M. 
    DNA variation at the rp49 gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure. 
    Genetics 158: 1147-1155. (2001). 

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